r - Transform a matrix txt file in spectra data for ChemoSpec package -


i want use chemospec mass spectra of 60'000 datapoint.

i have them in 1 txt file matrix (x + 90 samples = 91 columns; 60'000 rows).

how may adapt file spectra data without exporting again each single file in csv format (which quite long in r given size of data)?

the typical (and only?) way import data chemospec way of getmanycsv() function, question indicates requires 1 csv file each sample.

creating 90 csv files 91 columns - 60,000 rows file described, may slow , tedious in r, done standalone application, whether existing utility or ad-hoc script.

an r-only solution create new method, getonebigcsv(), adapted getmanycsv(). after all, the logic of getmanycsv() relatively straight forward.
don't expect such solution sizzling fast, should, in case, compare time takes run getmanycsv() , avoid having create , manage many files, hence overall faster , less messy.


Comments

Post a Comment

Popular posts from this blog

c++ - Is it possible to compile a VST on linux? -

for class project i'm attempting write vst plugin backed cuda. current cuda workflow on linux box, i'd prefer compile , link there. according wikipedia , should possible (i couldn't find steinberg documentation relevant linux) can't find makefile or instructions on how build if aren't using xcode or visual studio. i'm vst 3 sdk doesn't support linux. when try compile plugin under linux, error: ./base/source/fatomic.cpp:39:30: fatal error: libkern/osatomic.h: no such file or directory this issue caused following code in "vst3 sdk/base/source/fatomic.cpp" #if mac #include <libkern/osatomic.h> #if mac_os_x_version_min_required > mac_os_x_version_10_4 #define native_atomic_type (volatile int32_t*) #else #define native_atomic_type (int32_t*) #endif #elif windows #include <windows.h> #endif but hope compiling under linux work vst sdk 2.4. reading. jvstwrapper seems run on lin...
Read more

c# - SharpSVN - How to get the previous revision? -

i trying find efficient way previous revision of file text comparison using sharpsvn. using (svnclient c = new svnclient()) { c.authentication.defaultcredentials = new networkcredential( configurationmanager.appsettings.get("svnserviceusername") , configurationmanager.appsettings.get("svnservicepassword") , configurationmanager.appsettings.get("svnservicedomain") ); c.authentication.sslservertrusthandlers += new eventhandler<svnsslservertrusteventargs>(authentication_sslservertrusthandlers); collection<svnfileversioneventargs> fileversioncollection = new collection<svnfileversioneventargs>(); svnrevisionrange range = new svnrevisionrange(0, this.hooks.revision); svnfileversionsargs args = new svnfileversionsargs(); args.retrieveproperties = true; args.range = range; foreach (svnchangeitem item in log.changedpaths) { string path = this.repositorypath + it...
Read more

php cli reading files and how to fix it? -

while using php cli in ubuntu got apache web server cant read file can while using in browser. , error shows nothing , next used code testing purposes : <? $handle = fopen("testfile.txt", "r"); if ($handle) { while (($buffer = fgets($handle, 4096)) !== false) { echo $buffer; } if (!feof($handle)) { echo "error: unexpected fgets() fail\n"; } if(!is_readable($handle) { die("not readable"); } fclose($handle); } ?> how fix ? edit : after removing '@' before fopen got following error fopen(testfile.txt): failed open stream: no such file or directory in /var/www/log/ka.php on line 2 when run script through cli, uses shell's working directory, in opposition file's directory (which apache hands current directory). important you, since fopen call depends on relative path; , relative paths resolved relatively working directory, not script. to have script behave apache, eit...
Read more